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SRX25439619: Amazona ochrocephala Hi-C sequencing
1 ILLUMINA (Illumina NovaSeq 6000) run: 257.8M spots, 77.9G bases, 27.6Gb downloads

Design: Arima Hi-C manufacturer's protocol
Submitted by: G10K
Study: Amazona ochrocephala (yellow-crowned parrot) genome, bAmaOch1, sequence data
show Abstracthide Abstract
The yellow-crowned parrot (Amazona ochrocephala) is a species of parrot native to tropical South America, Panama and Trinidad and Tobago in the Caribbean. It is a bird of tropical forests (both humid and dry), woodlands, mangroves, and savannas and may also be found on cultivated land and suburban areas (from Wikipedia entry). This sample of a female individual rescued in Yarumal, Antioquia, Colombia by the organization Corantioquia was procured by Paola Pulido-Santacruz to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genome Lab (VGL) at the Rockefeller University, led by Erich D. Jarvis, Giulio Formenti, and Jennifer Balacco.
Sample: Animal sample from Amazona ochrocephala (yellow-crowned parrot) for VGP reference genome, bAmaOch1
SAMN41018448 • SRS22096546 • All experiments • All runs
Library:
Name: bAmaOch1_HiC_1
Instrument: Illumina NovaSeq 6000
Strategy: Hi-C
Source: GENOMIC
Selection: Restriction Digest
Layout: PAIRED
Runs: 1 run, 257.8M spots, 77.9G bases, 27.6Gb
Run# of Spots# of BasesSizePublished
SRR29949492257,788,09677.9G27.6Gb2024-07-24

ID:
34116704

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